Used the following script:

sed '
s/\bCofeMor/OfeMor/g;
s/\-c>/\-d>/g;
s/\bcFunctor/oFunctor/g;
s/\bCFunctor/OFunctor/g;
s/\b\%CF/\%OF/g;
s/\bconstCF/constOF/g;
s/\bidCF/idOF/g
s/\bdiscreteC/discreteO/g;
s/\bleibnizC/leibnizO/g;
s/\bunitC/unitO/g;
s/\bprodC/prodO/g;
s/\bsumC/sumO/g;
s/\bboolC/boolO/g;
s/\bnatC/natO/g;
s/\bpositiveC/positiveO/g;
s/\bNC/NO/g;
s/\bZC/ZO/g;
s/\boptionC/optionO/g;
s/\blaterC/laterO/g;
s/\bofe\_fun/discrete\_fun/g;
s/\bdiscrete\_funC/discrete\_funO/g;
s/\bofe\_morC/ofe\_morO/g;
s/\bsigC/sigO/g;
s/\buPredC/uPredO/g;
s/\bcsumC/csumO/g;
s/\bagreeC/agreeO/g;
s/\bauthC/authO/g;
s/\bnamespace_mapC/namespace\_mapO/g;
s/\bcmra\_ofeC/cmra\_ofeO/g;
s/\bucmra\_ofeC/ucmra\_ofeO/g;
s/\bexclC/exclO/g;
s/\bgmapC/gmapO/g;
s/\blistC/listO/g;
s/\bvecC/vecO/g;
s/\bgsetC/gsetO/g;
s/\bgset\_disjC/gset\_disjO/g;
s/\bcoPsetC/coPsetO/g;
s/\bgmultisetC/gmultisetO/g;
s/\bufracC/ufracO/g
s/\bfracC/fracO/g;
s/\bvalidityC/validityO/g;
s/\bbi\_ofeC/bi\_ofeO/g;
s/\bsbi\_ofeC/sbi\_ofeO/g;
s/\bmonPredC/monPredO/g;
s/\bstateC/stateO/g;
s/\bvalC/valO/g;
s/\bexprC/exprO/g;
s/\blocC/locO/g;
' -i $(find theories -name "*.v")

Rename `UCMRA` → `Ucmra`
Rename `CMRA` → `Cmra`
Rename `OFE` → `Ofe` (`Ofe` was already used partially, but many occurences were missing)
Rename `STS` → `Sts`
Rename `DRA` → `Dra`

This patch was created using

  find -name *.v | xargs -L 1 awk -i inplace '{from = 0} /^From/{ from = 1; ever_from = 1} { if (from == 0 && seen == 0 && ever_from == 1) { print "Set Default Proof Using \"Type*\"."; seen = 1 } }1 '

and some minor manual editing

Thanks to Robbert for fixing gen_heap